PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 251aa    MW: 25911.1 Da    PI: 8.2887
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635009.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.23.6e-40341341100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq ++ fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdP+yG+v++i++lqqq+ +l+ae+
  XP_013635009.1  34 PCGACKFLRRKCVPGCIFAPYFDSEQgSAYFAAVHKVFGASNVSKLLLHIPVHRRADAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEV 128
                     7***********************998899***************************************************************** PP

          DUF260  95 allkee 100
                     ++l+++
  XP_013635009.1 129 SYLQAH 134
                     *99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.833135IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-3934132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSGGGNTITS VGGGGCGGGS SSGGGGSSGG GGGPCGACKF LRRKCVPGCI FAPYFDSEQG  60
SAYFAAVHKV FGASNVSKLL LHIPVHRRAD AVVTICYEAQ ARIRDPIYGC VAHIFALQQQ  120
VVNLQAEVSY LQAHLASLEL PQPQTRPPPL TQPQPLFFTP PPPLSITDLP ASVSPYDLAS  180
IVDPPTSWAT QQRRFVDPRN QYGGSSSSSS AAVGLGGGNS DLQALAHELL HRQGSPPPAA  240
TDGSPSRSMS R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894980.0AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635009.10.0PREDICTED: LOB domain-containing protein 18
SwissprotO221311e-118LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0D3BQ340.0A0A0D3BQ34_BRAOL; Uncharacterized protein
STRINGBra004910.1-P1e-137(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-109LOB domain-containing protein 18